Assoc Prof Daniel Park
Lead, Melbourne Bioinformatics PlatformPHONE
+61 3 8344 9059MOBILE
EMAIL
djp@nullunimelb.edu.auWEB
Assoc Prof Daniel Park's website
Dr Vicky Perreau
Senior Research Fellow - Bioinformatics Training (Academic Specialist)PHONE
+61 3 9035 4945MOBILE
+61 4 0880 4386EMAIL
vperreau@nullunimelb.edu.au
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Assoc Prof Bernard Pope
Human Genomics Lead, Victorian Health and Medical Research FellowPHONE
+61 3 8344 0434MOBILE
EMAIL
bjpope@nullunimelb.edu.auWEB
Assoc Prof Bernard Pope's website
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Dr Gayle Philip
Research Fellow / Computational BiologistPHONE
+61 3 9035 3708MOBILE
EMAIL
gkphilip@nullunimelb.edu.auWEB
Dr Gayle Philip's website
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Dr Chol-Hee Jung
Research ScientistPHONE
+61 3 9035 3361MOBILE
EMAIL
jungch@nullunimelb.edu.auWEB
Dr Chol-Hee Jung's website
Education
- BSc, University of Korea, South Korea
- MSc, University of Korea, South Korea
- PhD, University of Queensland, QLD, Australia
Publications
Research Papers:
Joo J.E., E.M. Wong, L. Baglietto, C.H. Jung, H. Tsimiklis, et al. 2013. The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array. BMC Biotechnol 13: 23.
Jung C.H., C.E. Wong, M.B. Singh, P.L. Bhalla. 2012. Comparative genomic analysis of soybean flowering genes. PLoS One 7: e38250.
Jung, C.H., M.A. Hansen, I.V. Makunin, D.J. Korbie, and J.S. Mattick. 2010. Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. BMC Genomics 11: 77.
Jung, C.H., I.V. Makunin and J.S. Mattick. 2010. Identification of conserved Drosophila-specific euchromatin-restricted noncoding sequence motifs. Genomic 96: 154-166.
Lee, B.M., Y.J. Park, D.S. Park, H.W. Kang, J.G. Kim, E.S. Song, I.C. Park, U.H. Yoon, J.H. Hahn, B.S. Koo, G.B. Lee, H. Kim, H.S. Park, K.O. Yoon, J.H. Kim, C.H. Jung, N.H. Koh, J.S. Seo, and S.J. Go. 2005. The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Res 33: 577-586
Seo, J.S., H. Chong, H.S. Park, K.O. Yoon, C. Jung, J.J. Kim, J.H. Hong, H. Kim, J.H. Kim, J.I. Kil, C.J. Park, H.M. Oh, J.S. Lee, S.J. Jin, H.W. Um, H.J. Lee, S.J. Oh, J.Y. Kim, H.L. Kang, S.Y. Lee, K.J. Lee, and H.S. Kang. 2005. The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. Nat Biotechnol 23: 63-68.
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Dr Khalid Mahmood
Research ScientistPHONE
+61 3 9035 7939MOBILE
EMAIL
khalid.mahmood@nullunimelb.edu.auWEB
Dr Khalid Mahmood's website
Education
- BSc(Hons), KFUPM
- MSc, Monash University
- PhD, Monash University
Publications
- Reboul CF, Mahmood K, Whisstock JC, Dunstone MA. (2012) Predicting giant transmembrane β-barrel architecture. Bioinformatics, 15;28(10):1299-302. Epub 2012 Mar 30. [Epub ahead of print]
- Mahmood K, Webb GI, Song J, Whisstock JC, Konagurthu AS. (2011) Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs. Nucleic Acids Res, 40(6): e44.
- Song J, Tan H, Boyd SE, Shen H, Mahmood K, Webb GI, Akutsu T, Whisstock JC, Pike RN. (2011) Bioinformatic approaches for predicting substrates of proteases. J Bioinform Comput Biol. 9(1):149-78. Review.
- Mahmood, K., Konagurthu, A.S., Song, J., Buckle, A.M., Webb, G.I. and Whisstock, J.C. (2010) EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes, Bioinformatics, 26(17), 2076-2084.
- Tools: EGM
- Song J, Tan H, Shen H, Mahmood K, Boyd SE, Webb GI, Akutsu T, Whisstock JC (2010) Cascleave: towards more accurate prediction of caspase substrate cleavage sites. Bioinformatics, 26(6):752-760.
- Song J, Tan H, Mahmood K, Law RH, Buckle AM, Webb GI, Akutsu T, Whisstock J.C. (2009) Prodepth: predict residue depth by support vector regression approach from protein sequences only. PLoS One, 4(9):e7072.
- Ashley M. Buckle, David Abramson, Abdullah A. Amin, Mark Bate, Anthony Beitz, Colin Enticott, Noel Faux, Khalid Mahmood, Matthew Swift, Andrew Treloar and Whisstock., J.C. (2007) eResearch Solutions for High Throughput Structural Biology. 3rd IEEE International Conference on e-Science and Grid Computing. IEEE Computer Society, Bangalore, India.
- Faux, N.G., Huttley, G.A., Mahmood, K., Webb, G.I., Garcia de la Banda, M. and Whisstock, J.C. (2007) RCPdb: An evolutionary classification and codon usage database for repeat-containing proteins, Genome Research, 17, 1118-1127.
- Fenalti, G., Law, R.H., Buckle, A.M., Langendorf, C., Tuck, K., Rosado, C.J., Faux, N.G., Mahmood, K., Hampe, C.S., Banga, J.P., Wilce, M., Schmidberger, J., Rossjohn, J., El-Kabbani, O., Pike, R.N., Smith, A.I., Mackay, I.R., Rowley, M.J. and Whisstock, J.C. (2007) GABA production by glutamic acid decarboxylase is regulated by a dynamic catalytic loop, Nat Struct Mol Biol, 14, 280-286.
- Fulton, K.F., Bate, M.A., Faux, N.G., Mahmood, K., Betts, C. and Buckle, A.M. (2007) Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium, Nucleic Acids Res, 35, D304-307.
Mr Patrick Garnaut
Software Developer (Bioinformatics)PHONE
+61 90353434MOBILE
EMAIL
patrick.garnaut@nullunimelb.edu.au
Mr Michael Franklin
Research Software Engineer, Portable Pipelines ProjectPHONE
MOBILE
+61 428 655 248EMAIL
michael.franklin@nullunimelb.edu.auWEB
Mr Michael Franklin's website
Ms Catherine Bromhead
Support Software DeveloperPHONE
+61 3 8344 0516MOBILE
EMAIL
catherine.bromhead@nullunimelb.edu.au
Dr Anna Syme
Senior Bioinformatician, Australian BioCommons projectPHONE
MOBILE
EMAIL
anna.syme@nullunimelb.edu.auWEB
Dr Anna Syme's website
Ms Jessica Chung
Bioinformatician (Research Assistant)PHONE
+61 3 9035 5822MOBILE
EMAIL
jessicac@nullunimelb.edu.auWEB
Ms Jessica Chung's website
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Dr Nuwan Goonasekera
Software EngineerPHONE
MOBILE
EMAIL
ngoonasekera@nullunimelb.edu.auWEB
Dr Nuwan Goonasekera's website
Biography
Nuwan is a software engineer at Melbourne Bioinformatics. His research interests include software fault isolation, software design and cloud computing. He is currently working primarily on expanding the cloudman cluster computer platform’s capabilities on Nectar and EC2 clouds. In the past, he worked as a senior software engineer at Industrial & Financial systems, developing enterprise applications. Nuwan’s role is to offer technical support for all aspects of the Genomics Virtual Laboratory.
Dr Thomas Harrop
BioinformaticianPHONE
MOBILE
EMAIL
tharrop@nullunimelb.edu.auWEB
Dr Thomas Harrop's website
Mr Steven Morgan
BioinformaticianPHONE
MOBILE
EMAIL
steven.morgan@nullunimelb.edu.auWEB
Mr Steven Morgan's website
Mr Peter Georgeson
casual tutor (completing PhD)PHONE
+61 3 8344 8269MOBILE
+61 (0) 411 409 270EMAIL
peter.georgeson@nullunimelb.edu.auWEB
Mr Peter Georgeson's website
Ms Grace Hall
Academic Specialist - BioinformaticianPHONE
MOBILE
EMAIL
grace.hall1@nullunimelb.edu.auWEB
Ms Grace Hall's website
Ms Juny Kesumadewi
Software DeveloperPHONE
+61 3 9035 4522MOBILE
EMAIL
juny.kesumadewi@nullunimelb.edu.auWEB
Ms Juny Kesumadewi's website
Mr Michael Milton
Bioinformatics Specialist, Melbourne Genomics, based at WEHI, also offering training and consulting to Melbourne BioinformaticsPHONE
+61 3 9035 6627MOBILE
EMAIL
milton@nullunimelb.edu.auWEB
Mr Michael Milton's website
Dr Johan Gustafsson
Bioinformatics Engagement OfficerPHONE
+ 61 3 9035 5014MOBILE
+61 422 220 861EMAIL
johan.gustafsson@nullunimelb.edu.auWEB
Dr Johan Gustafsson's website