New version of the mGVL

Simon Gladman has now published a new version of the mGVL. It’s now at 0.11-1 and is based on GVL 4.1.

Following loads of testing while at the Galaxy conference (#GCC2016) it now has:

• the newest version of Galaxy – including embedded JBrowse (as a tool)
• some image updates
• a new GVL extension system (for things like IRIDA, SMRT Portal, Web Apollo installations on GVL..)
• linuxbrew on the commandline with Nullarbor, Snippy, Prokka, bedtools, bwa, blast, kraken, kallisto and others
• Visualisation software like artemis, Bandage etc.

Work on reference data is scheduled to happen soon.

Archives needed are:

• The GVL base image version 4.1.
• The new version of cloudman and the new GVL package_registry system (for extra installable options)
• The mGVL filesystem archive
• The mGVL apps archive

There is a machine with mGVL 0.11-1 on it located at gcc.genome.edu.au

There are some shared histories on it for trialling with snippy, JBrowse etc.

New training materials are at:

• github.io/lscc_docs – our previous existing training material
• github.io/gcc2016_docs – things taught at GCC2016
  • http://tinyurl.com/gcc16-assembly
  • http://tinyurl.com/gcc16-annotation